PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.WC3GT
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 233aa    MW: 26918 Da    PI: 9.8651
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.WC3GTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-126761790
                 E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
           B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90
                 ++p +f +++  g++  +  + ++    + +W+++l  r +++r ++ +GW++ +++ gLk gD++vF+++++   f
  Araip.WC3GT  6 RIPIEFSRKNlhGLE--G--KAKIGVNGNMRWDMEL--RFCGDRATFNAGWRNVCNDFGLKFGDVCVFEMIKDtPLF 76
                 589999999965333..3..5677777899******..77888899***********************99863333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.019183IPR003340B3 DNA binding domain
PROSITE profilePS5086311.335185IPR003340B3 DNA binding domain
CDDcd100171.53E-9676No hitNo description
Gene3DG3DSA:2.40.330.101.6E-12682IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-10678IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-15681IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-11138225IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-11138227IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0015143228IPR003340B3 DNA binding domain
CDDcd100171.21E-6147228No hitNo description
PROSITE profilePS508638.275194233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MILEQRIPIE FSRKNLHGLE GKAKIGVNGN MRWDMELRFC GDRATFNAGW RNVCNDFGLK  60
FGDVCVFEMI KDTPLFFNFF LIRPKQQPIN LCHQNLPADH HQSLPQLNKV QGQTSQSRKR  120
KRSSDGTSFR IRDRAPNMQE NQFILEIKDY HLSGSTVFIP NGFCRRHKDC LGKLVNLKFG  180
EILRPVKLLA RGAFSEGWLN FAKECKLNTG DFCSFELVDD QNLIFEVSTK KSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1924344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.16e-11related to vernalization1 1